| Total found: 42 records |
Layoun P., López-Pérez M., Haro-Moreno J.M.,
Haber M., Thrash J.C., Henson M.W., Kavagutti V.,
Ghai R.,
Salcher M. (2024) Flexible genomic island conservation across freshwater and marine Methylophilaceae. The ISME Journal
18: wrad036.
DOI: 10.1093/ismejo/wrad036
|
Mukherjee I., Grujčić V.,
Salcher M.,
Znachor P.,
Seďa J., Devetter M.,
Rychtecký P.,
Šimek K.,
Shabarova T. (2024) Integrating depth-dependent protist dynamics and microbial interactions in spring succession of a freshwater reservoir. Environmental Microbiome
19: 31.
DOI: 10.1186/s40793-024-00574-5
|
Nweze J., Gupta S.,
Salcher M., Šustr V., Horváthová T., Angel R. (2024) Disruption of millipede-gut microbiota in E. pulchripes and G. connexa highlights the limited role of litter fermentation and the importance of litter-associated microbes for nutrition. Communications Biology
7: 1204.
DOI: 10.1038/s42003-024-06821-2
|
Wong H.,
Bulzu P.,
Ghai R.,
Chiriac M.,
Salcher M. (2024) Ubiquitous genome streamlined Acidobacteriota in freshwater environments. ISME Communications
4: ycae124.
DOI: 10.1093/ismeco/ycae124
|
Chiriac M.,
Haber M.,
Salcher M. (2023) Adaptive genetic traits in pelagic freshwater microbes. Environmental Microbiology
25: 606–641.
DOI: 10.1111/1462-2920.16313
|
Kavagutti V.,
Bulzu P.,
Chiriac M.,
Salcher M.,
Mukherjee I.,
Shabarova T.,
Grujčić V.,
Mehrshad M.,
Kasalický V., Andrei A.S.,
Jezberová J.,
Seďa J.,
Rychtecký P.,
Znachor P.,
Šimek K.,
Ghai R. (2023) High‑resolution metagenomic reconstruction of the freshwater spring bloom. Microbiome
11: 15.
DOI: 10.1186/s40168-022-01451-4
|
Kavagutti V.,
Chiriac M.,
Ghai R.,
Salcher M.,
Haber M. (2023) Isolation of phages infecting the abundant freshwater Actinobacteriota order ‘Ca. Nanopelagicales’. The ISME Journal
17: 943–946.
DOI: 10.1038/s41396-023-01400-5
|
Ngugi D.K.,
Salcher M., Andrei A.S.,
Ghai R., Klotz F.,
Chiriac M., Ionescu D., Büsing P., Grossart H., Xing P., Priscu J.C., Alymkulov S., Pester M. (2023) Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes. Sciences Advances
9: eadc9392.
DOI: 10.1126/sciadv.adc9392
|
Park H.,
Shabarova T.,
Salcher M.,
Kosová L.,
Rychtecký P.,
Mukherjee I.,
Šimek K.,
Porcal P.,
Seďa J.,
Znachor P.,
Kasalický V. (2023) In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model. Microbiome
11: 112.
DOI: 10.1186/s40168-023-01522-0
|
Šimek K.,
Mukherjee I.,
Szöke-Nagy T.,
Haber M.,
Salcher M.,
Ghai R. (2023) Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores. ISME Journal
17: 84–94.
DOI: 10.1038/s41396-022-01326-4
|
Chiriac M.,
Bulzu P., Andrei A.S., Okazaki Y., Nakano S.,
Haber M., Kavagutti V.,
Layoun P.,
Ghai R.,
Salcher M. (2022) Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. Microbiome
10: 84.
DOI: 10.1186/s40168-022-01274-3
|
Dirren-Pitsch G., Bühler D.,
Salcher M., Bassin B., Le Moigne A., Schuler M., Pernthaler J., Posch T. (2022) FISHing for ciliates: Catalyzed reporter deposition fluorescence in situ hybridization for the detection of planktonic freshwater ciliates. Frontiers in Microbiology
13: 1070232.
DOI: 10.3389/fmicb.2022.1070232
|
Mujakic I., Andrei A.,
Shabarova T., Kolesár Fecskeová L.,
Salcher M., Piwosz K.,
Ghai R., Koblížek M. (2021) Common presence of phototrophic Gemmatimonadota in temperate freshwater lakes. mSystems
6: e01241-20.
DOI: 10.1128/mSystems.01241-20
|
|
Okazaki Y., Fujinaga S.,
Salcher M., Callieri C., Tanaka A., Kohzu A., Oyagi H., Tamaki H., Nakano S. (2021) Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing. Microbiome
9: DOI: 10.1186/s40168-020-00974-y
|
Piwosz K.,
Mukherjee I.,
Salcher M., Grujčić V.,
Šimek K. (2021) CARD-FISH in the sequencing era: Opening a new universe of protistan ecology. Frontiers in Microbiology
12: 640066.
DOI: 10.3389/fmicb.2021.640066
|
Shabarova T.,
Salcher M.,
Porcal P.,
Znachor P.,
Nedoma J., Grossart H.,
Seďa J.,
Hejzlar J.,
Šimek K. (2021) Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology
6: 479–488.
DOI: 10.1038/s41564-020-00852-1
|
Di Cesare A., Dzhembekova N., Cabello-Yeves P.J., Eckert E.M., Slabakova V., Slabakova N., Peneva E., Bertoni R., Corno G.,
Salcher M., Kamburska L., Bertoni F., Rodriguez-Valera F. , Moncheva S., Callieri C. (2020) Genomic comparison and spatial distribution of different Synechococcus phylotypes in the Black Sea Frontiers in Microbiology
11: 1979.
DOI: doi.org/10.3389/fmicb.2020.01979
|
Mukherjee I.,
Salcher M., Andrei A., Kavagutti V.,
Shabarova T., Grujčić V.,
Haber M.,
Layoun P., Hodoki Y., Nakano S.,
Šimek K.,
Ghai R. (2020) A freshwater radiation of diplonemids Environmental Microbiology
22: 4658–4668.
DOI: doi.org/10.1101/2020.05.14.095992
|
Piwosz K.,
Shabarova T., Pernthaler J., Posch T.,
Šimek K.,
Porcal P.,
Salcher M. (2020) Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations mSphere
5: e00052-20.
DOI: 10.1128/mSphere.00052-20
|
Salcher M., Andrei A.,
Bulzu P., Keresztes Z.G., Banciu H.L.,
Ghai R. (2020) Visualization of Lokiarchaeia and Heimdallarchaeia (Asgardarchaeota) by fluorescence in situ hybridization and catalyzed reporter deposition (CARD-FISH) mSphere
5: e00686-20.
DOI: doi.org/10.1128/mSphere.00686-20
|
